Author: simon

Executive director of Software Freedom Conservancy

Previously spoke that LCA 2012 about closed-source software on her heart implant. Since then has pivoted career to more open-source advocacy in career.

• DMCA exemption for medical device research
• When you ask your doctor about safety of devices you sound like a conspiracy theorist
• Various problems have been highlighted, some progress
• Some companies addressing them

Initially published paper highlighting problem without saying she had the device

• Got pushback from groups who thought she was scaremongering
• Companies thinking about liability issues
• After told story in 2012 things improved

Had to get new device recently.

• Needed this disabled since her jobs pisses off hackers sometimes
• All manufacturers said they could not disable wireless access
• Finally found a single model that could be disabled made by a European manufacturer

Note: This is a quick summary, Lots more covered but hard to cover. Video should be good. Her slides were broken though much of the talk be she still delivered great talk.

Collaborating with Everybody: Open Source Drug Discovery

• Term used is a bit undefined. Open Source, Free Drugs?
• First Open Source Project – Praziquantel
  • Molecule has 2 mirror image forms. One does the job, other tastes awful. Pills were previously a mix
  • Project to just have pill with the single form
    • Created discussion
    • Online Lab Notebook
    • 75% of contributions were from private sector (especially Syncom)
    • Ended up finding a approach that worked, different from what was originally proposed from feedback.
    • Similar method found by private company that was also doing the work
• Conventional Drug discovery
  • Find drug that kills something bad – Hit
  • Test it and see if it is suitable – Led
  • 13,500 molecules in public domain that kill maleria parasite
• 6 Laws of Open Scrience
  • All data is open and all ideas are shared
  • Anyone can take part at any level of the project
• Openness increasing seen as a key
• Open Source Maleria
  • 4 campaigns
  • Work on a molecule, park it when doesn’t seem promising
  • But all data is still public
• What it actually is
  • Electronic lab book (80% of scientists still use paper)
  • Using Labtrove, changing to labarchives
  • Everything you do goes up every day
  • Todo list
    • Tried stuff, ended up using issue list on github
    • Not using most other github stuff
  • Data on a Google Sheet
  • Light Website, twitter feed
• Lab vs Code
• Have a promising molecule – works well in mice
  • Would probably be a patentable state
  • Not sure yet exactly how it works
• Competition – Predictive model
  • Lots of solutions submitted, not good enough to use
  • Hopeful a model will be created
• Tried a a known-working molecule from elsewhere, but couldn’t get it to work
  • This is out in the open. Lots of discussion
• School group able to recreate Daraprim, a high-priced US drug
• Public Domain science is now accepted for publications
• Need to to make computers understand molecule digram and convert to representative format which can then be search one.
• Missing
  • Automated links to databases in tickets
  • Basic web page stuff, auto-porting of data, newsletter, become non-profit, stickers
  • Stuff is not folded back into the Wiki
• OS Mycetoma – New Project
  • Fungus with no treatment
  • Working on possible molecule to treat
• Some ideas on how to get products created this way to market – eg “data exclusivity”

Beyond Web 2.0 Russell Keith-Magee

• Django guy
• Back in 2005 when Django first came out
  • Web was fairly simple, click something and something happened
  • model, views, templates, forms, url routing
• The web c 2016
  • Rich client
  • API
  • mobile clients, native apps
  • realtime channels
• Rich client frameworks
  • reponse to increased complexity that is required
  • Complex client-side and complex server-side code
• Isomorphic Javascript development
  • Same code on both client and server
  • Only works with javascript really
  • hacks to work with other languages but not great
• Isomorphic javascript development
  • Requirements
  • Need something in-between server and browser
  • Was once done with Java based web clients
  • model, view, controller
• API-first development
• How does it work with high-latency or no-connection?
• Part of the controller and some of the model needed in the client
  • If you have python on the server you need python on the client
  • brython, skulp, pypy.js
  • <script type=”text/pyton”>
  • Note: Not phyton being compiled into javascript. Python is run in the browser
  • Need to download full python interpreter though (500k-15M)
  • Fairly fast
• Do we need a full python interpreter?
  • Maybe something just to run the bytecode
  • Batavia
  • Javascript implementation of python virtual machine
  • 10KB
  • Downside – slower than cpython on the same machine
• WASM
  • Like assembly but for the web
  • Benefits from 70y of experience with assembly languages
  • Close to Cpython speed
  • But
    • Not quite on browsers
    • No garbage collection
    • Cannot manipulate DOM
    • But both coming soon
• Example: http://bit.ly/covered-in-bees
• But “possible isn’t enough”
• pybee.org
• pybee.org/bee/join

Using “old skool” Free tools to easily publish API documentation – Alec Clew

• https://github.com/alecthegeek/doc-api-old-skool
• You API is successful if people are using it
• High Quality and easy to use
• Provide great docs (might cut down on support tickets)
• Who are you writing for?
  • Might not have english as first language
  • New to the API
  • Might have different tech expertise (different languages)
  • Different tooling
• Can be hard work
• Make better docs
  • Use diagrams
  • Show real code (complete and working)
• Keep your sentence simple
• Keep the docs current
• Treat documentation like code
  • Fix bugs
  • add features
  • refactor
  • automatic builds
  • Cross platform support
  • “Everything” is text and under version control
• Demo using pandoc
• Tools
• pandoc, plantuml, Graphviz, M4, make, base/sed/python/etc

Lightning Talks

• Nic – Alt attribute
  • need to be added to images
  • Don’t have alts when images as links
  • http://bit.ly/Nic-slides
• Vaibhav Sager – Travis-CI
  • Builds codes
  • Can build websites
  • Uses to build Resume
  • Build presentations
• Steve Ellis
  • Openshift Origin Demo
• Alec Clews
  • Python vs C vs PHP vs Java vs Go for small case study
  • Implemented simple xmlrpc client in 5 languages
  • Python and Go were straightforward, each had one simple trick (40-50 lines)
  • C was 100 lines. A lot harder. Conversions, etc all manual
  • PHP wasn’t too hard. easier in modern vs older PHP
• Daurn
  • Lua
  • Fengari.io – Lua in the browser
• Alistair
  • How not to docker ( don’t trust the Internet)
  • Don’t run privileged
  • Don’t expose your docker socket
  • Don’t use host network mode
  • Don’t where your code is FROM
  • Make sure your kernel on your host is secure
• Daniel
  • Put proxy in front of the docker socket
  • You can use it to limit what no-priv users with socket access to docker port can do

Manage all your tasks with TaskWarrior Paul ‘@pjf’ Fenwick

• Lots of task management software out there
  • Tried lots
  • Doesn’t like proprietary ones, but unable to add features he wants
  • Likes command line
• Disclaimer: “Most systems do not work for most people”
• TaskWarrior
  • Lots of features
  • Learning cliff

Intro to TaskWarrior

• Command line
• Simple level can be just a todo list
• Can add tags
  • unstructured many to many
  • Added just put putting “+whatever” on command
  • Great for searching
  • Can put all people or all types of jobs togeather
• Meta Tags
  • Automatic date related (eg due this week or today)
• Project
  • A bunch of tasks
  • Can be strung togeather
  • eg Travel project, projects for each trip inside them
• Contexts (show only some projects and tasks)
  • Work tasks
  • Tasks for just a client
  • Home stuff
• Annotation (Taking notes)
  • $ task 31 annotate “extra stuff”
  • has an auto timestamp
  • show by default, or just show a count of them
• Tasks associated with dates
  • “wait”
  • Don’t show task until a date (approx)
  • Hid a task for an amount of time
  • Scheduled tasks urgency boasted at specific date
• Until
  • delete a task after a certain date
• Relative to other tasks
  • eg book flights 30 days before a conference
  • good for scripting, create a whole bunch of related tasks for a project
• due dates
  • All sorts of things give (see above) gives tasks higher priority
  • Tasks can be manually changed
• Tools and plugins
  • Taskopen – Opens resources in annotations (eg website, editor)
• Working with others
  • Bugworrier – interfaces with github trello, gmail, jira, trac, bugzilla and lots of things
  • Lots of settings
  • Keeps all in sync
• Lots of extra stuff
  • Paul updates his shell prompt to remind him things are busy
• Also has
  • Graphical reports: burndown, calendar
  • Hooks: Eg hooks to run all sort of stuff
  • Online Sync
  • Android client
  • Web client
• Reminder it has a steep learning curve.

Love thy future self: making your systems ops-friendly Matt Palmer

• Instrumentation
  • Good article
• Instrumenting incoming requests
  • Count of the total number of requests (broken down by requestor)
  • Count of reponses (broken down by request/error)
  • How long it took (broken down by sucess/errors
  • How many right now
• Get number of in-progress requests, average time etc
• Instrumenting outgoing requests
  • For each downstream component
  • Number of request sent
  • how many reponses we’ve received (broken down by success/err)
  • How long it too to get the response (broken down by request/ error)
  • How many right now
• Gives you
  • incoming/outgoing ratio
  • error rate = problem is downstream
• Logs
  • Logs cost tends to be more than instrumentation
• Three Log priorities
  • Error
    • Need a full stack trace
    • Add info don’t replace it
    • Capture all the relivant variables
    • Structure
  • Information
    • Startup messages
    • Basic request info
    • Sampling
  • Debug
    • printf debugging at webcale
    • tag with module/method
    • unique id for each request
    • late-bind log data if possible.
    • Allow selective activation at runtime (feature flag, special url, signals)
  • Summary
    • Visbility required
    • Fault isolation

Look out for what’s in the security pipeline – Casey Schaufler

Old Protocols

• SeLinux
  • No much changing
• Smack
  • Network configuration improvements and catchup with how the netlable code wants things to be done.
• AppArmor
  • Labeled objects
  • Networking
  • Policy stacking

New Security Modules

• Some peopel think existing security modules don’t work well with what they are doing
• Landlock
  • eBPF extension to SECMARK
  • Kills processes when it goes outside of what it should be doing
• PTAGS
  • General purpose process tags
  • Fro application use ( app can decide what it wants based on tags, not something external to the process enforcing things )
• HardChroot
  • Limits on chroot jail
  • mount restrictions
• Safename
  • Prevents creation of unsafe files names
  • start, middle or end characters
• SimpleFlow
  • Tracks tainted data

Security Module Stacking

• Problems with incompatibility of module labeling
• People want different security policy and mechanism in containers than from the base OS
• Netfilter problems between smack and Apparmor

Container

• Containers are a little bit undefined right now. Not a kernel construct
• But while not kernel constructs, need to work with and support them

Hardening

• Printing pointers (eg in syslog)
• Usercopy